Package: Grouphmap 1.0.0

Grouphmap: 'Grouphmap' is an Automated One-Step Common Analysis of Batch Expression Profile

The 'Grouphmap' was implemented in R, an open-source programming environment, and was released under the provided website. The difference analysis is based on the 'limma' package, which can cover gene and protein expression profiles (Reference: Matthew E Ritchie , Belinda Phipson , Di Wu , Yifang Hu , Charity W Law , Wei Shi , Gordon K Smyth (2015) <doi:10.1093/nar/gkv007>). The GO enrichment analysis is based on the 'clusterProfiler' package and supports three common species: human, mouse, and yeast (Reference: Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He (2012) <doi:10.1089/omi.2011.0118>). The results of batch difference analysis and enrichment analysis are output in separate folders for easy viewing and further visualization of the results during the process. The results returned a heatmap in R and exported to 3 folders named DEG, go, and merge.

Authors:Yuchen Sun [aut, cre]

Grouphmap_1.0.0.tar.gz
Grouphmap_1.0.0.zip(r-4.5)Grouphmap_1.0.0.zip(r-4.4)Grouphmap_1.0.0.zip(r-4.3)
Grouphmap_1.0.0.tgz(r-4.4-any)Grouphmap_1.0.0.tgz(r-4.3-any)
Grouphmap_1.0.0.tar.gz(r-4.5-noble)Grouphmap_1.0.0.tar.gz(r-4.4-noble)
Grouphmap_1.0.0.tgz(r-4.4-emscripten)Grouphmap_1.0.0.tgz(r-4.3-emscripten)
Grouphmap.pdf |Grouphmap.html✨
Grouphmap/json (API)

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1 exports 0.09 score 126 dependencies 125 downloads

Last updated 1 years agofrom:d7842c6f64. Checks:OK: 7. Indexed: yes.

Exports:ghmap

Dependencies:AnnotationDbiapeaplotaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemcliclusterProfilercodetoolscolorspacecowplotcpp11crayoncurldata.tableDBIdigestDOSEdplyrenrichplotfansifarverfastmapfastmatchfgseaformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataggforceggfunggnewscaleggplot2ggplotifyggraphggrepelggtreeglueGO.dbGOSemSimgraphlayoutsgridExtragridGraphicsgsongtablehttrhttr2igraphIRangesisobandjsonliteKEGGRESTlabelinglambda.rlatticelazyevallifecyclelimmamagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslorg.Mm.eg.dbpatchworkpheatmappillarpkgconfigplogrplyrpngpolyclippurrrqvalueR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenreshape2rlangRSQLiteS4VectorsscalesscatterpieshadowtextsnowstatmodstringistringrsyssystemfontstibbletidygraphtidyrtidyselecttidytreetreeiotweenrUCSC.utilsutf8vctrsviridisviridisLitewithrXVectoryulab.utilszlibbioc